Credits
=======

Most of EQTK was written by `Justin Bois <http://bois.caltech.edu>`_. This project began in the laboratory of `Niles Pierce <http://piercelab.caltech.edu/>`_ and `Caltech <http://caltech.edu/>`_. Brian Wolfe was a key collaborator in early development. Some of the code base, particularly linear algebra routines and portions of the test suite, is a refactoring of code written by Brian. Michaelangelo Lucas also contributed some code that was refactored. Mark Fornace, Nick Porubsky, and Grant Roy all provided valuable advice and discussion.


Citing EQTK
===========

A publication about EQTK and its algorithms is forthcoming.

In the meantime, you can cite the paper where the basis of the core algorithm first appeared, `https://doi.org/10.1137/060651100 <https://doi.org/10.1137/060651100>`_.

.. code-block:: bibtex

    @article{dirks2007,
      doi = {10.1137/060651100},
      url = {https://doi.org/10.1137/060651100},
      year = {2007},
      volume = {49},
      number = {1},
      pages = {64--88},
      author = {Robert M. Dirks and Justin S. Bois and Joseph M. Schaeffer and Erik Winfree and Niles A. Pierce},
      title = {Thermodynamic analysis of interacting nucleic acid strands},
      journal = {SIAM Review}
    }

Please also cite the DOI for the version you use in your research, `https://doi.org/10.22002/D1.1430 <https://doi.org/10.22002/D1.1430>`_. Here is a citation for the current version, 0.1.1. 

.. code-block:: bibtex

    @misc{https://doi.org/10.22002/d1.1430,
      doi = {10.22002/D1.1430},
      url = {https://data.caltech.edu/records/1430},
      author = {Bois, Justin S.},
      keywords = {Github},
      title = {justinbois/eqtk: Version 0.1.1},
      publisher = {CaltechDATA},
      year = {2020}
    }